Hi,
If you dont need to do any NAT on the firewall then go with transparent mode. Major difference between transparent and route mode is not NAT and Routing supported in transparent mode. Other wise everything else is ther.
Only other thing to think about is that you would need to use aggressive move VPNs as the VPN in trasparent mode would need to authenticate via a ID rather than an IP address as it is sat behind a NAT device, which means that the VPN would always have to be started from the device behind the NAT device. Not a problem if you turn on VPN monitoring and Rekey as the VPN will always be up.
Also nice and easy to deply in transparent mode as you dont have to change any other addressing on devices, have done this a number of times for customers.
Hope this helps.
Andy