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As many others, I am fairly new to Juniper from a Cisco world.
my question is does Juniper have a command reference like Cisco which lists all the configuration commands and options? If so, where can I find the beast?
There is the Junos Feature explorer that lets you search or browse the commands available here.
You might also find the free 7 hour Cisco to Junos course helpful as a translator of the basic command setups.
Or the free pdf version from the Juniper Day One series Junos for IOS Engineers
It looks like a good starting point.